16 July 2025

Kenya enacts Finance Act, 2025

  • On 27 June 2025, the President signed the Finance Act 2025 into law, enacting amendments to various tax laws, including the Income Tax Act, VAT Act, Tax Procedures Act, the Excise Duty Act and the Stamp Duty Act, with the commencement date being 1 July 2025 unless stated otherwise.
  • The Act has introduced an array of tax policy and tax administrative changes to expand the tax base and streamline tax procedures.
  • Notable changes include the introduction of Advance Pricing Agreements regime, the limitation of tax loss carry forward period and the expansion of the coverage of VAT on digital services provided by nonresident suppliers.
  • The Act also provides for increased tax rates on certain goods, the introduction of targeted preferential tax rates and changes to the taxation of digital assets.
 

Executive summary

On 27 June 2025, the President of Kenya signed into law the Finance Act, 2025 (the Act). The Act has amended various tax laws, including the Income Tax Act (ITA), VAT Act, 2013 (VAT Act), Excise Duty Act, Tax Procedures Act, 2015 (TPA), Miscellaneous Fees and Levies Act and the Stamp Duty Act.

This Tax Alert summarizes the key amendments contained in the Finance Act, 2025. Unless specifically mentioned, the changes contained in this analysis took effect on 1 July 2025.

Because this Alert is lengthy, a list of contents is included here to help the reader find specific sections of interest:

Executive summary
Business and personal taxes
Business tax
    • Definition of individual retirement fund
    • Definition of the term "related person"
    • Taxation of "withdrawals"
    • Repeal of the provisions of Minimum Tax
    • Expanded scope of Significant Economic Presence Tax
    • Repeal of Digital Asset Tax
    • Minimum top-up tax due date
    • Diminution allowance
    • Deductibility of expenditure incurred on public sports facilities
    • Repeal of carry forward of capital losses
    • Limitation of carry forward of tax losses
    • Mandatory requirement to submit country-by-country reports
    • Introduction of Advance Pricing Arrangements
    • Taxation of life insurance businesses
    • Change of year-end applications
    • Exemption of payments made by the national carrier from income tax
    • Repeal of withholding tax on the sale of scrap
    • Due date for tax on untaxed gains or profits
    • Repeal of penalty for underpayment of instalment tax
    • Extension of timeline for processing income tax exemption application
    • Exemption of gains on the transfer of property in a Special Economic Zones
    • New incentives targeting entities certified by the Nairobi International Financial Centre Authority
    • Introduction of investment allowance on spectrum licenses purchased by telecommunication operators
    • Clarity on tax rate for qualifying interest and qualifying dividends
    • Exclusion of certain transfer of property from capital gains tax
Personal tax
    • Increase in the allowable limit for per diem
    • Deduction of mortgage interest on construction of residential premises
    • Taxation of withdrawals from registered schemes
    • Tax exemption on payment of gratuity
    • Repeal of deductible employment gain
    • Eligibility of employee reliefs, deduction and exemptions
    • Clarity on tax rate for fringe benefits provided by employers
Tax Procedures Act, 2015 (TPA)
    • Exclusions from electronic tax invoicing requirements
    • KRA to provide reasons for an amended assessment
    • Relief from penalty for failure to deduct or withhold tax
    • Security on property for unpaid tax
    • Recovery of tax from nonresident taxpayers
    • Certificate of Origin Requirements
    • Extension of timelines for review and audit of tax refund applications
    • Timelines for late objections
    • Penalties for late submission and failure to submit returns
    • Waiver of penalties and interest arising from electronic system errors
Indirect Taxes
Value Added Tax Act (VAT)
    • Definition of a tax invoice
    • Expansion of the scope of taxable electronic services
    • Reduction of the timeline to apply for VAT refunds
    • Relief to apply for VAT refund when a taxable supply becomes zero-rated
    • Enhancement of VAT refund on bad debts
    • Issuance of valid tax Invoice
    • Liability to pay VAT for exempt and zero-rated supplies
    • Amendment of VAT status of various supplies
Excise Duty Act
    • Definition of a digital lender
    • Taxation of the digital economy
    • Classification of excisable goods
    • Definition and compliance relief for micro distillers
    • Excise duty on methanol and ethanol
    • Timelines for issuance of excise licenses
    • Definition of the Amount deposited into the customer's betting wallet
    • Amendment to the list of excisable goods
    • Amendment to the list of excisable services
    • Exemptions for Defence Forces Welfare Services
Miscellaneous Fees and Levies Act
    • Import Declaration Fee
    • Clarification on Refund Provisions
    • Railway Development Levy
    • Changes in Export and Investment Promotion Levy rates
Other Amendments
Stamp Duty Act
    • Exemption of stamp duty on internal reorganizations

Business and personal tax

Business tax

Definition of individual retirement fund

The Act amends the definition of the term "individual retirement fund" by deleting the requirement to abide with the Income Tax (Retirement Benefit) Rules. The Rules require individual retirement funds to be registered with the Commissioner — i.e. the Kenya Revenue Authority (KRA). This amendment aims to align the treatment of individual retirement funds with other retirement funds, as outlined by the Tax Laws (Amendment) Act, 2024 (TLAA), which removed the requirement to register with the KRA.

Definition of the term "related person"

The Act streamlines the definition of "related person" across the ITA by including a single definition of the term in Section 2 of the ITA and deleting the definition of the term in the other Sections of the ITA where the term had been defined. Previously, the term was defined in Section 2 and the Eighth Schedule to the ITA. In the case of two persons, the amended definition defines a related person a person who participates directly or indirectly in the management, control or capital of the other's business.

When more than two persons are involved, a "related person" means any other person who participates directly or indirectly in the management, control or capital of the business of the two persons. It also includes: an individual who participates directly or indirectly in the management, control, or capital of the business of the two persons; an individual who is associated with the two persons by marriage, consanguinity or affinity; and a situation in which the two persons participate in the management, control or capital of the individual's business.

Taxation of "withdrawals"

The Act has changed the taxation framework for the players in the gaming and betting industry. Previously, the ITA provided for withholding tax on winnings at the rate of 20% for both resident persons and nonresident persons. Winnings were defined as the payout from the transaction excluding the amount stacked/wagered. The Act has deleted the provisions relating to the taxation of winnings and introduced tax on withdrawals made by players at the withholding tax rate of 5%, for both resident persons and nonresident persons. The term "withdrawals" has been defined as the amount of money withdrawn by a customer from their betting or gaming wallet maintained by a person licensed under the Betting, Lotteries and Gaming Act.

Repeal of the provisions of Minimum Tax

The Act has repealed Section 12D of the ITA that provided for the administration of minimum tax. This aligns the ITA with a Court of Appeal ruling that determined minimum tax was unconstitutional.

Expanded scope of Significant Economic Presence Tax

The Act has expanded the scope of Significant Economic Presence Tax (SEPT) by including income derived or accrued from Kenya through a business carried out over the internet or an electronic network. The prior proviso only covered income from services provided over a digital marketplace. Additionally, the Act has repealed the exemption from SEPT for nonresident persons with an annual turnover of less than five million Kenya shillings (KES5m). Moreover, the Act provides that the Cabinet Secretary shall make Regulations for the better implementation of the SEPT provisions within 6 months from 1 July 2025.

The TLAA introduced SEPT in place of Digital Service Tax (DST). The definition of the in-scope businesses, however, created uncertainty over whether SEPT applied to all activities carried out over the internet or an electronic network. The change provides certainty relating to the scope of the SEPT regime.

Repeal of Digital Asset Tax

The Act has repealed provisions relating to Digital Asset Tax (DAT). The DAT was payable by a person deriving income from the transfer or exchange of digital assets at the rate of 3% of the transfer or exchange value. It was the obligation of the owner of the platform or the person who facilitated the transfer or exchange to deduct the tax and remit it within five working days after the transaction.

This is a welcome development as the Government seeks to spur the growth of the digital economy particularly given that the DAT was payable on the value of the asset rather than the gain on disposal.

Minimum top-up tax due date

The Act has introduced a due date for payment of minimum top-up tax, being the last day of the fourth month after the end of the year of income. This will align it with the due date for payment of balance of tax. The TLAAintroduced a domestic minimum top-up tax to align with the Organisation for Economic Co-operation and Development (OECD)/G20 Inclusive Framework on Base Erosion and Profit Shifting (BEPS) Pillar Two. However, the TLAA did not indicate the due date and thus the proposed amendment is meant to cure this deficiency.

Diminution allowance

The Act has introduced a diminution allowance of 100% with respect to any implement, utensil or similar article that a person uses in the generation of his or her taxable income. The diminution allowance will not be applicable to machinery or equipment that would qualify for an investment allowance as provided for in the Second Schedule to the ITA. A similar provision relating to diminution allowance had been repealed through the Finance Act, 2023. Reinstatement of the allowance is a welcome change as it will help ensure that expenses relating to small-value items utilized in the generation of taxable income are claimed in a single year of income

Deductibility of expenditure incurred on public sports facilities

The Act has introduced a provision for the deductibility of expenditure incurred in the construction of a public sports facility on public grounds in the determination of taxable income.

Repeal of carry forward of capital losses

The Act has repealed the provision that provided for the carry forward of capital losses. Previously, a taxpayer could indefinitely carry forward capital losses and offset them against capital gains.

Limitation of carry forward of tax losses

The Act has introduced a five-year cap on deductibility of tax losses. Previously, the law permitted taxpayers to carry forward tax losses indefinitely. The Act has not provided a transition clause for existing tax losses, thereby leading to uncertainty on the utilization of historical tax losses.

The Act has also provided that a taxpayer may apply to the Cabinet Secretary in charge of Finance through the KRA for an extension of time, beyond the five-year limit, to claim a deduction if the taxpayer provides evidence of inability to utilize the tax losses within five years. Note, however, that the Finance Act, 2022, effective 1 July 2022 repealed the proviso that the Act seeks to amend to allow for application of extension of the tax loss carry forward period. This, therefore, creates a potential challenge.

Mandatory requirement to submit country-by-country reports

The Act has removed the exemption granted to resident surrogate parent entities of a Multinational Enterprise (MNE) Group from filing a country-by-country (CbC) report if the following conditions were met:

  • The ultimate parent entity was obligated to file a CbC report in its jurisdiction of tax residence
  • The jurisdiction in which the ultimate parent entity was resident for tax purposes had an international agreement and a competent authority agreement in force
  • The KRA had not notified the resident constituent entity in Kenya of a systemic failure, if any

This change will increase the compliance costs for the affected MNEs.

(Note: A "surrogate parent entity" is a constituent entity of an MNE Group that the Group appoints to file the CbC report in the constituent entity's jurisdiction of tax residence, on behalf of the MNE Group.)

Introduction of Advance Pricing Arrangements

The Act has introduced an Advance Pricing Agreement (APA) framework. This will enable taxpayers to enter an arrangement with the KRA on specific related-party transactions and thus mitigate transfer pricing controversy risks. The validity of an APA will be restricted to five consecutive years, but the KRA will have the right to revoke it through written notice of declaration in case of misrepresentation of facts. The Act provides that the Cabinet Secretary shall make Regulations for the better implementation of the APA framework within six months from 1 January 2026.

The introduction of APAs is long overdue, particularly considering that Kenya is a hub for MNEs. The change will provide taxpayers with complex international transactions to enter into APAs, thus promoting tax certainty.

  • Effective date: 1 January 2026

Taxation of life insurance businesses

The Act has replaced the term "life fund" with "life insurance fund" in relation to the taxation of long-term insurance companies. The taxation of long-term insurance companies is premised on certain aspects of their funds. The amendment implies that the taxation of long-term insurance companies will be made only in reference to life insurance funds.

Change of year-end applications

The Act has reduced the timeframe within which the KRA must communicate its decision in writing to a person who has sought approval for change of year-end from six months to three months from the date of receipt of the application. If the KRA does not provide its decision within the prescribed period the application shall be deemed allowed.

The process of changing the year-end involves an adjustment to the taxpayer's online filing portal by KRA. Therefore, in the absence of an adjustment by the KRA, the taxpayer would not be able to practically effect the year-end change on their online filing portal even after the expiry of the three-month time limit.

Exemption of payments made by the national carrier from income tax

The Act has introduced an exemption from withholding tax for payments made by the national carrier (i.e., airline) to anonresident person without a permanent establishment in Kenya for specialized technical, maintenance, compliance, training or digital systems support services, where such services are not available in Kenya or the service provider is certified or accredited by an international regulatory, standard-setting or licensing body.

Repeal of withholding tax on the sale of scrap

The Act has repealed the withholding tax provisions in relation to the sale of scrap. Withholding tax at the rate of 1.5% on the sale of scrap was introduced through the TLAA.

Taxation of gains or profits derived by a nonresident ship owner or charterer

The Act has included under the withholding tax regime the gains or profits derived from the business of a ship owner or charterer by a nonresident person.

Gains or profits derived by a nonresident ship owner or charterer are subject to income tax. However, the law did not provide for withholding tax on this income. In practice, these nonresidents have been declaring tax on the income on self-assessment basis.

Due date for tax on untaxed gains or profits

The Act has provided that a company that distributes dividends out of untaxed gains or profits will be required to remit the tax payable at the due date for filing the company's self-assessment income tax returns.

Repeal of penalty for underpayment of installment tax

The Act has repealed a provision that imposed a 20% penalty on the difference between the amount of installment tax payable and the installment tax actually paid. This amendment is a welcome change as the 20% penalty was viewed as quite punitive.

Extension of timeline for processing income tax exemption application

The Act has extended the timeframe for processing income tax exemption applications from 60 days to 90 days. The change will give the KRA additional time to review the applications, but the extended review time will also leave taxpayers waiting longer to receive a response on their application for income tax exemptions.

Exemption of gains on the transfer of property in a Special Economic Zones

The Act has amended the provision concerning the exemption of gains from the transfer of property within a Special Economic Zone (SEZ), specifying that the exemption will only apply to the transfer of property within a SEZ by licensed developers, enterprises or operators. The prior proviso provided for exemption of gains on the transfer of property within a SEZ enterprise, developer and operator.

New incentives targeting entities certified by the Nairobi International Financial Centre Authority

The Act introduces incentives to stimulate growth of the Nairobi International Financial Centre Authority (NIFCA) regime as follows:

  • Dividends tax exemption: The Act exempts dividends paid by companies certified by NIFCA from taxation provided that the company reinvests at least KES250m in Kenya within the year of income. This amendment aims to encourage investment and economic growth by motivating certified entities under NIFCA to reinvest part of their returns into the local economy.
  • Reduced corporate income tax rate: The Act has introduced a preferential corporate income tax regime for certified Nairobi International Financial Centre (NIFC) companies, which will be subject to income tax at the rate of 15% corporate income tax rate for the first 10 years from the year of commencement of its operations and 20% for the subsequent 10 years of operations. To qualify for the reduced corporate tax rates, the NIFC certified company ought to meet three conditions:
    1. Invest at least KES3b in Kenya in the first three years of operations
    2. Require, if it is a holding company, that at least 70% of its employees in senior management are citizens of Kenya
    3. Require, if the regional headquarters of the company is in Kenya, that at least 60% of its employees in senior management are citizens of Kenya
  • NIFC start up regime: The Act further provides that certified NIFCA start-ups will enjoy a corporate income tax rate of 15% for the first three years and 20% for the succeeding four years. An NIFC start-up has not been defined neither in the Act nor the NIFC Act.

This is a welcome change as the Government seeks to promote the NIFC considering that it has remained largely dormant since it was established several years ago. The reduced CIT rates for the NIFCA start-ups may, however, not crystallize into substantial benefits because most start-ups are not profitable in their initial years of operation. The Government may need to reconsider the incentives that are granted to start ups.

Introduction of investment allowance on spectrum licenses purchased by telecommunication operators

The Act has expanded the scope of the investment allowance granted to telecommunication operators by including the purchase or acquisition of spectrum license within the ambit of the allowance. Previously, the allowance was only applicable to the purchase or acquisition of an indefeasible right to use a fibre optic cable. The applicable rate is 10% per annum in equal installments.

For a spectrum license purchased or acquired before 1 July 2025, the allowance shall be restricted to the unamortized portion over the remaining useful life of the spectrum license.

Clarity on tax rate for qualifying interest and qualifying dividends

The Act expressly provides that the resident withholding tax rates of 5% and 15% on the gross amount payable for qualifying dividends and qualifying interest, respectively, shall be a final tax. This is a welcome change, as it provides clarity that there will be no further taxation on qualifying interest and qualifying dividends.

Exclusion of certain transfer of property from capital gains tax

The Act has expanded the scope of transactions that are excluded from capital gains tax to include the transfer of assets to a company where an individual holds a 100% shareholding.

Personal tax

Increase in the allowable limit for per diem

The Act has increased the tax free per diem from KES2k per day to KES10k per day. It is noteworthy that this benefit only applies where an employee is granted these amounts when on official duties, outside their usual place of work.

Deduction of mortgage interest on construction of residential premises

The Act has amended the ITA to allow deduction of interest incurred on a mortgage loan taken to construct residential premises. Previously, the mortgage interest deduction only applied to mortgages taken to purchase or improve residential premises occupied by an individual during a year of income.

Taxation of withdrawals from registered schemes

The Act has repealed specific exemptions that were granted on qualifying lumpsum or periodic withdrawals from registered retirement schemes. This implies that payments of pension benefits from registered retirement schemes will only be exempt as provided in Paragraph 53 of the First Schedule to the ITA.

Paragraph 53 of the First Schedule to the ITA provides for exemption of payments of pension benefits upon attainment of the retirement age from registered retirement schemes.

The exemption also applies on:

  • Payment of gratuity
  • Other allowances paid under a pension scheme
  • Payment of a retirement annuity
  • Withdrawals from the fund (i) prior to attaining the retirement age due to ill health or (ii) after 20 years from the date of registration as a member of the fund

Tax exemption on payment of gratuity

The TLAA (Amendment) Act, 2024 introduced an income tax exemption for gratuities or other allowances paid under a public pension scheme. However, the provision limited the exemption to payouts from public schemes. The Act has now provided for a general exemption on payment of all gratuity and other allowances paid under a pension scheme. This implies that payment of gratuities from both private and public schemes will be exempt from income tax.

Repeal of deductible employment gain

The Act has repealed a deduction that had been available to qualifying individuals who were not Kenyan citizens equal to one-third of their total gains and profits from employment if they met the following conditions:

  • The individual's employer was a nonresident company or partnership trading for profit.
  • The individual was in Kenya solely to perform his/her duties in relation to the employer's regional office, and the KRA had approved this office for the purposes of this paragraph.
  • The individual was absent from Kenya for the performance of those duties for a period or periods amounting, in the aggregate, to 120 days or more in that year of income.
  • The individual's gains and profits from this employment were not deductible in ascertaining the employer's total income chargeable to tax under the ITA.

Eligibility of employee reliefs, deduction and exemptions

The Act has introduced an explicit requirement for employers to grant employees all applicable deductions, reliefs and exemptions provided for in the ITA.

Clarity on tax rate for fringe benefits provided by employers

The Act provides for a tax rate of 30% on fringe benefits provided by an employer. The TLAA haddeleted this provision, likely inadvertently.

Tax Procedures Act, 2015 (TPA)

Exclusions from electronic tax invoicing requirements

The Act amends Section 23A of the TPA to provide that payments subject to withholding tax that is a final taxare excluded from the electronic tax invoicing requirements. Withholding tax is a final tax if (1) a payment subject to withholding tax is made to a nonresident, or (2) qualifying dividends, qualifying interest or winnings are paid to a resident. Other transactions exempted from electronic tax invoicing requirements are payments of emoluments, payments for imports, payments of interest, transactions for investment allowances and airline passenger ticketing.

KRA to provide reasons for an amended assessment

The Act introduces a provision under Section 31 of the TPA that requires the KRA to issue reasons for amending an assessment if the KRA amends a taxpayer's self-assessment return. This provision aims to promote the right to fair administrative action enshrined in the Constitution of Kenya by ensuring that assessments are not arbitrarily issued to taxpayers without a basis, as well as to give taxpayers more clarity when responding to the Commissioner.

Relief from penalty for failure to deduct or withhold tax

The Act amends Section 39A of the TPA to exclude from liability of the principal tax, a person who fails to remit or deduct withholding tax on a payment, if the recipient of the payment has fully paid and accounted for the principal tax. This offers a reprieve to taxpayers who have been penalized to pay the entire principal sum of tax not withheld, even if the recipient has accounted for the income tax, resulting in unjust enrichment of the tax collector.

Security on property for unpaid tax

The Act has amended Section 40(2) of the TPA to allow the Registrar to register a notification from the KRA to hold a defaulting taxpayer's property as security for unpaid tax without charging stamp duty. Previously, the law allowed the Registrar to register a notification from the KRA as a restraint on property for unpaid taxes without levying or charging a fee but did not specify whether stamp duty, as prescribed in the Stamp Duty Act, is payable on the registration of such securities. Further, the Act amends Section 40(5) of the TPA by exempting from stamp duty the transfer of charged property by the KRA where the taxpayer fails to pay the tax liability.

Recovery of tax from nonresident taxpayers

The Act amends Section 42 of the TPA to extend the Commissioner's powers to collect unpaid taxes from persons holding or owing money to nonresident taxpayers who are subject to tax in Kenya.

Certificate of origin requirements

The Act has introduced certificate of origin requirements for all goods imported into Kenya whereby no person shall import goods into Kenya without presenting a valid certificate of origin to the KRA or an authorized officer. A certificate of origin has been defined as ''an official document issued by a competent authority of the government of the source country which certifies that the goods being imported into Kenya were manufactured in that particular source country."

The KRA or authorized officer shall:

  • Not process any import entry documentation without a valid certificate of origin being presented
  • Require production of a certificate of origin and other supporting documentation as proof of origin on goods imported into Kenya prior to their clearance for entry into Kenya

A certificate of origin shall be considered valid if it provides the following information:

  • Name and address of the exporter
  • Name and address of the importer
  • Port of origin
  • Accurate description of the goods
  • Quantity of the goods
  • Country of origin
  • Country of destination

Any person who contravenes the provisions relating to the certificate of origin requirements shall have their goods seized or forfeited by the KRA or approved officer.

This is an important development that persons importing goods into Kenya should take note of to help avoid seizure or forfeiture of the goods they intend to import into Kenya.

Extension of timelines for review and audit of tax refund applications

The timelines for the KRA to ascertain and determine an application for a refund has been extended from 90 days to 120 days. Additionally, the period for audit of refund applications has been extended from 120 days to 180 days. The extension of these periods provides the KRA with more time to review and audit tax refund applications. However, the provision will result in longer waiting times for taxpayers seeking refunds.

Timelines for late objections

The Act amends Section 51 of the TPA to introduce a new subsection 7B, which clarifies that if the KRA grants a taxpayer leave to lodge a late objection, the period within which the KRA is required to make an objection decision commences from the date the objection is lodged. This amendment aims to provide clarity on the basis of starting the computation of time for decision-making by the KRA when a late objection is accepted by the KRA thus eliminating ambiguity and controversy.

Penalties for late submission and failure to submit returns

The Act introduces changes to Section 83(1) of the TPA, broadening the scope of penalties to cover both the late submission of tax returns and the failure to submit a return. This aligns the provision with the amendments previously made to the marginal heading of the section by the Tax Procedures (Amendment) Act. As a result, taxpayers who fail to file a return will now face the prescribed penalties.

Waiver of penalties and interest arising from electronic system errors

The Act has empowered the Cabinet Secretary, upon the recommendation of the Commissioner, to waive all or part of any penalty or interest if the liability arose due to:

  • An error generated by an electronic tax system (hereinafter "the system")
  • Delays in updating the system
  • Duplication of penalties or interest caused by system malfunction
  • Incorrect registration of a taxpayer's obligations

Indirect Taxes

Value Added Tax Act (VAT)

Definition of a tax invoice

The Act has amended the definition of a tax invoice to include an electronic tax invoice issued as per Section 23A of the TPA. This implies that for VAT purposes, only invoices issued through TIMS/eTIMS are recognized as valid tax invoices.

Expansion of the scope of taxable electronic services

The Act has expanded the scope of taxable electronic services provided by nonresident suppliers to include internet, radio or television broadcasting. This implies that nonresident persons providing internet, radio or television broadcasting services are required to register and account for VAT in Kenya.

Reduction of the timeline to apply for VAT refunds

The Act has amended Section 17(5)(d) of the VAT Act to reduce the time frame for applying for VAT refunds from the current 24 months to 12 months from the date the tax became due and payable. The change aims to harmonize the time limit for applying VAT refunds with the 12-month period stipulated in Section 47(1)(b) of the Tax Procedures Act, 2015. VAT registered taxpayers may miss out on any refunds that are not lodged within 12 months, as such end up being in a permanent VAT credit position.

Relief to apply for VAT refund when a taxable supply becomes zero-rated

The TLAA (Amendment) Act 2024 amended Section 17(5) of the VAT Act by adding a new Section 5(ea) after Section 5(e), which stipulates that if a taxable supply becomes zero-rated or exempt and this results in a permanent credit position for a registered person due to a difference in tax rates (specifically, the rate applicable on 1 July 2022, and a lower rate), the registered person must apply to the KRA for relief within six months after the commencement of the provision.

The Finance Act 2025 amends section 17(ea) of the VAT Act to specify that excess credit can now only be claimed for taxable supplies that became zero-rated on 1 July 2023, eliminating the previous reference to the VAT rate applicable on 1 July 2022. The amendment also removes references to exempt supplies.

This amendment enhances clarity for registered persons regarding their eligibility for refunds by explicitly stating the requirement to apply for a refund, as opposed to the previous provision, which vaguely mentioned applying for relief without specifying the type. By focusing on a specific date for zero-rated supplies and removing ambiguity related to exempt supplies, the changes are expected to streamline the refund application process and improve compliance with VAT regulations.

Enhancement of VAT refund on bad debts

The Act has reduced the time limit within which a taxpayer can apply for a refund of VAT on bad debts from three years to two years from the date of the supply. The Act has further amended Section 31 of the VAT Act to allow offset of any approved VAT refund on bad debts against future/outstanding VAT liabilities.

The Act has also deleted the provision requiring taxpayers to refund the KRA any VAT on bad debts recovered from the recipient of the supply subsequently after being refunded by the Commissioner. Furthermore, no interest shall apply going forward. This is a welcome change as it improves cashflows in a shorter period of two years as opposed to three years.

Issuance of valid tax invoice

The Act has amended Section 42(1) of the VAT Act to broaden the requirement to issue a valid tax invoice by all registered persons making supplies. A valid tax invoice (TIMS/eTIMS compliant) should be issued for both taxable and exempt supplies made by a VAT registered person. In the past it has been presumed that exempt supplies do not require valid tax invoices which has always led to reconciliation challenges and variances in incomes registered for income taxes and VAT purposes.

Liability to pay VAT for exempt and zero-rated supplies

The Act has introduced Section 66A of the VAT Act, which stipulates that VAT shall apply to any prior conditionally approved exempt or zero-rated purchases disposed or used in a manner inconsistent with their intended (zero rated or exempt) purpose. The change intends to punish taxpayers who misuse exemptions granted by the National Treasury/Commissioner.

Amendment of VAT status of various supplies

The Act has amended the VAT status of the following products from exempt to taxable:

 

Paragraph

Description

Current status

New rate

Sector

51, Part 1, 1st Schedule

Fuels, lubricants and tires imported or purchased for direct and exclusive use in the implementation of official aid-funded projects upon approval by the Cabinet Secretary responsible for the National Treasury

Exempt

16%

Government & Public Sector

112 Part 1, 1st Schedule

Taxable goods, excluding motor vehicles, imported or purchased for direct and exclusive use in geothermal, oil or mining prospecting or exploration by a company granted a prospecting or exploration license in accordance with the Energy Act, 2019, production sharing contracts in accordance with the Petroleum Act, 2019, or a mining license in accordance with the Mining Act, 2016, upon recommendation by the Cabinet Secretary responsible for matters relating to energy, Cabinet Secretary responsible for matters relating to petroleum, or the Cabinet Secretary responsible for matters relating to mining, as the case may be**

Exempt

16%

Energy and Mining

128 Part 1, 1st Schedule

Discs, tapes, solid-state nonvolatile storage devices, "smartcards" and other media for the recording of sound or of other phenomena, whether or not recorded of tariff heading 85.23, including matrices and masters for the production of discs, but excluding products of Chapter 37 upon approval by the Cabinet Secretary responsible for matters relating to health**

Exempt

16%

Technology, Media, and Telecommunications

154 Part 1, 1st Schedule

Taxable goods of Chapter 5407 and Chapter 6309 imported as raw materials for manufacture of textile products in Kenya upon recommendation of the Cabinet Secretary responsible for investments, trade and industry

Exempt

16%

Manufacturing

**An exemption that had been approved prior to the deletion of this paragraph came into effect shall continue to apply until 30 June 2026 (after 30 June 2026, the products become taxable).

The removal of exemptions implies that consumers of the above supplies are likely to incur additional costs in respect of the additional 16% VAT. Companies that were only providing these goods and services and not registered for VAT shall now be required to register and account for VAT in Kenya.

The Act has amended the VAT Act, extending the VAT exemption granted to capital goods in the manufacturing sector where the exemption was granted before 27 December 2024. The exemption shall continue to apply until 27 December 2025. Previously, the exemption applied on approvals granted before 1 January 2024 and it was supposed to last up 31 December 2024.

The Act has amended the VAT status of the following products from taxable to exempt:

 

Paragraph

Description

Previous rate

New rate

3006.93.00 Placebos and blinded (or double blinded) clinical trial kits for a recognized clinical trial, put up in measured doses

16%

Exempt

Health

155 Part 1, 1st Schedule

Mosquito repellent

16%

Exempt

Health

156 Part 1, 1st Schedule

Inputs, machinery and raw materials used in the manufacture of mosquito repellent on recommendation by the Cabinet Secretary responsible for matters relating to health.

16%

Exempt

Health

157 Part 1, 1st Schedule

The supply of locally consumed teas

16%

Exempt

Health

101 Part 1, 1st Schedule

All goods imported or purchased locally by the Defence Forces Welfare Services**

16%

Exempt

Government

36, Part 2, 1st Schedule

Taxable services supplied to manufacturers of mosquito repellents upon recommendation by the Cabinet Secretary responsible for matters relating to health

16%

Exempt

Health

37 Part 2, 1st Schedule

Accommodation, restaurant, beauty salon and laundry services provided by the Defence Forces Welfare Services

16%

Exempt

Health

38, Part 2, 1st Schedule

Taxable services for direct and exclusive use of the Defence Forces Welfare Services

16%

Exempt

Health

** The paragraph initially exempted only alcoholic and nonalcoholic beverages. With effect from 1 July 2025, all goods provided to the Defence Forces Welfare Services are exempted from VAT.

The exemption of the above supplies implies that the suppliers will not be entitled to a claim of input tax on costs incurred in providing the above supplies. Furthermore, these suppliers will need to consider VAT deregistration as persons dealing wholly in exempt supplies are not required to register for VAT.

The Act has amended the VAT rate (from 16% to zero rated (0%)) of Packaging materials for tea and coffee upon recommendation by the Cabinet Secretary for matters relating to agriculture. Suppliers of this product will be able to apply for VAT refunds on any excess VAT credits.

Excise Duty Act

Definition of a digital lender

The Act expands the definition of a digital lender to include a person extending credit through an electronic medium and to exclude banks licensed under the Banking Act, a Sacco society registered under the Co-operative Societies Act, or a microfinance institution licensed under the Microfinance Act. This expands the scope beyond Central Bank of Kenya (CBK) regulated entities and to cover informal and nontraditional lenders, including fintech-based and peer-to-peer platforms, by imposing excise duty on fees charged by all digital lenders.

Taxation of the digital economy

The Act introduces the definition of a digital marketplace to include an online platform that enables users to sell goods or provide services to other users. This definition aligns to the one already included in the VAT Act and Income Tax Act. Additionally, Section 5 of the Excise Duty Act has been amended to include services offered by nonresidents over the internet, an electronic network or through a digital marketplace. Excise duty will be applicable at 20% of the transaction value. This is in line with the Government's agenda of taxing the digital economy.

Classification of excisable goods

The Act has recommended that excisable goods be classified according to the tariff codes contained in the East African Community Common External Tariffs, and the General Interpretation Rules (GIRs). This aligns Kenya's classification of goods under the Act in accordance with internationally accepted standards and regional trade protocols.

Definition and compliance relief for micro distillers

The Act introduces a new definition for micro distillers to mean manufacturers of spirituous beverages who use two fundamental processes - fermentation and distillation - employing a still (boiler) not exceeding 1,800 liters in capacity, and whose annual production volume does not exceed 100,000 liters. This classification intends to distinguish small-scale producers from industrial-scale manufacturers and tailor compliance requirements accordingly. The Act further amends section 25 of the Excise Duty Act to exempt licensed micro distillers from requirements related to automation, continuous piping and mass-flow meters. Instead, their production volume will be monitored through excise stamps or other mechanisms prescribed by the Commissioner. This supports small-scale producers by reducing compliance costs while maintaining regulatory oversight.

Excise duty on methanol and ethanol

The Act amends Section 15 of the Excise Duty Act by introducing excise duty on the importation, distribution, or handling of methanol and ethanol in Kenya. This measure is intended to regulate inputs used in illicit alcohol production and enhance public health safeguards. It will however also increase costs of the methanol and ethanol for genuine importers and users of the products which are not readily available in Kenya.

Timelines for issuance of excise licenses

The Act introduces a statutory 14-day timeline for the KRA to review and approve any applications for excise licenses. This amendment establishes a clear timeline for the issuance (or refusal) of excise licenses, which previously had no specified timeframe. This could help prevent administrative delays and support the ease of doing business for local manufacturers and importers.

Definition of the amount deposited into the customer's betting wallet

The Act defines the amount deposited into a customer's betting wallet as the money transferred by a customer into a wallet managed by a licensed betting or gaming operator, specifically for the purpose of engaging in betting or gaming activities. This definition shifts the excise duty trigger from the point of wagering to the point of deposit. It standardizes the taxable event, closes previous compliance gaps and supports revenue collection by anchoring the levy to a verifiable transaction.

Amendment to the list of excisable goods

The Act revises the list of excisable goods and corresponding excise duty rates as set out in Part I of the First Schedule to the Excise Duty Act as follows:

 

Description

Previous rate

New rate

Coal

2.5 % customs value

nil

Imported paper or paper board, labels of all kinds whether or not printed of tariff heading 4821.10.00 and 4821.90.00 but excluding those originating from East African Community Partner States that meet the East African Community Rules of Origin

25% or KES150 per kg whichever is higher

25% or KES200 per kg whichever is higher

Imported cartons, boxes and cases of corrugated paper or paper board and imported folding cartons, boxes and case of non-corrugated paper or paper board and imported skillets, free-hinge lid packets of tariff heading 4819.10.00, 4819.20.10 and 4819.20.90

25%

25% or KES200 per kg whichever is higher

Imported glass bottles (excluding imported glass bottles for packaging of pharmaceutical products) provided that it shall not apply to glass bottles imported from any of the countries within the East African Community

35%

35%

or KES40 per kg whichever is higher

Imported ceramic flags and paving, hearth or wall tiles; unglazed ceramic mosaic cubes and the like, whether or not on a backing; finishing ceramics of tariff 6907

5% of custom value or KES200 per m2

5% or KES300 per m2 whichever is higher

Cosmetics and beauty products of tariff heading No. 3303,

3304, 3305 and 3307

15%

nil

Imported float glass and surface ground or polished glass, in sheets, whether or not having an absorbent, reflecting or nonreflecting layer, but not otherwise worked of tariff 7005 but excluding those imported by registered processer upon recommendation by the Cabinet Secretary responsible for matter relating to industry and those originating from East African Community Partner States that meet the East African Community Rules of Origin

35 % customs value or

KES200 per kg whichever is higher

35 % excisable value or

KES500 per square meter whichever is higher

Imported other self-adhesive plates, sheets, film, foil, tape, strip and other flat shapes, of plastics, whether or not in rolls of tariff number 3919.90.90 but excluding those originating from East African Community Partner States that meet the East African Community Rules of Origin

25% or KES75 per

kg., whichever

is higher

25%of excisable value or KES200 per kg., whichever is higher

Imported printed polymers of ethylene of other plates, sheets, film, foil and strip, of plastics, noncellular and not reinforced, laminated, supported or similarly combined with other materials of tariff number 3920.10.90, but excluding those originating from East African Community Partner States that meet the East African Community Rules of Origin

25% or KES75 per

kg., whichever

is higher

25% excisable value or KES200 per kg., whichever is higher

Imported printed polymers of vinyl chloride containing by weight not less than 6% of other plates, sheets, film, foil and strip, of plastics, noncellular and not reinforced, laminated, supported or similarly combined with other materials of tariff number 3920.43.90, but excluding those originating from East African Community Partner States that meet the East African Community Rules of Origin

25% or KES75 per

kg., whichever

is higher

25% of excisable value or KES200 per kg., whichever is higher

Imported printed poly (ethylene terephthalate) of polycarbonates, alkyd resins, polyallyl esters or other polyesters of other plates, sheets, film, foil and strip, of plastics, noncellular and not reinforced, laminated, supported or similarly of tariff number 3920.62.90, but excluding those originating from East African Community Partner States that meet the East African Community Rules of Origin

25% or KES75 per

kg., whichever

is higher

25% of excisable value or KES200 per kg., whichever is higher

Imported printed cellular of other plastics of other plates, sheets, film, foil and strip of tariff number 3921.19.90, but excluding those originating from East African Community Partner States that meet the East African Community Rules of Origin

25% or KES75 per

kg., whichever

is higher

25% of excisable value or KES200 per kg., whichever is higher

Printed self-adhesive paper of tariff number 4811 .41 .90, but excluding those originating from East African Community Partner States that meet the East African Community Rules of Origin

25% or KES150 per kg., whichever is higher

and/or

25% or KES200 per kg, whichever

is higher

25% of excisable

value or KES200 per kg., whichever is

higher

Gummed paper and paperboard of tariff number 4811.49.00 but excluding those originating from East African Community Partner States that meet the East African Community Rules of Origin.

25% or KES150 per kg., whichever is higher

and/or

25% or KES200 per kg., whichever

is higher

25% of excisable

value or KES200 per

kg., whichever is

higher

Imported tea whether or not flavored.

nil

25% of excisable value

Imported uncoated kraft paper and paperboard, in rolls or sheets; kraftliner; unbleached of tariff number 4804.11.00 but excluding those originating from East African Community Partner States that meet the East African Community Rules of Origin

nil

25% of excisable value or KES50 per kg., whichever is higher

Imported other kraft paper or paperboard weighing 150g/m2 or less, in rolls or sheets; unbleached of tariff number 4804.31.00 but excluding those originating from East African Community Partner States that meet the East African Community Rules of Origin

nil

25% of excisable value or KES50 per kg., whichever is higher

Imported other kraft paper or paperboard weighing more than 150g/m2 but less than 225g/m2, in rolls or sheets; unbleached of tariff number 4804.41.00 but excluding those originating from East African Community Partner States that meet the East African Community Rules of Origin

nil

25% of excisable value or KES50 per kg., whichever is higher

Imported other kraft paper or paperboard weighing 225g/m2 or more others in rolls or sheets; unbleached of tariff number 4804.51.00 but excluding those originating from East African Community Partner States that meet the East African Community Rules of Origin

nil

25% of excisable value or KES50 per kg., whichever is higher

Imported Glass of heading 70.03, 70.04 or 70.05, bent, edge-worked, engraved, drilled, enameled or otherwise worked, but not framed

or fitted with other materials of Tariff Heading 70.06, but excluding those from East Africa Community Partner States that meet the

East Africa Community Rules of Origin

nil

35% of excisable value

or KES500 per m2 whichever is higher

Imported safety glass of tariff numbers 7007.19.00 and 7007.29.00 but excluding those originating from East African Community Partner States that meet the East African Community Rules of Origin

35% of Custom Value or KES200 per kg.

35% of excisable value

or KES500 per m2 whichever is higher

Imported Multiple-walled insulating units of glass of Tariff Heading 70.08, but excluding those from East Africa Community Partner States that meet the East Africa Community Rules of Origin

nil

35% of excisable value

or KES500 per m2 whichever is higher

Imported fully built and semi-built direct air capture machines

nil

25% of Excisable Value

Imported aluminum profiles, fabricated doors and fabricated windows of tariff numbers 76.04, 7608.20 and 7610.10

nil

25% of excisable value or KES400 per kg., whichever is higher

Nonrefillable lighters of tariff number 9613.10.00

nil

25% of excisable value

or KES500 per kg.

Spirits of undenatured extra neutral alcohol of alcoholic strength exceeding 90% purchased by licensed manufacturers of spirituous beverages.

KES10 per centiliter of pure alcohol

KES500 per liter

Amendment to the list of excisable services

 

Description

Previous rate

New rate

Betting (excluding horse racing)

15% of the amount wagered or staked

 5% of the amount deposited into customer's wallet

Gaming

15% of the amount wagered or staked

5% of the amount deposited into customer's wallet

Prize competition

15% of the amount paid or charged to participate in a prize competition

5% of the amount paid or charged to participate in a prize competition

Lottery ((excluding charitable lotteries)

15% of the amount paid or charged to buy the lottery ticket

5% of the amount paid or charged to buy the lottery ticket

Virtual assets transactions fees

nil

10% of the excisable value

Exemptions for Defense Forces Welfare Services

The Act amends the Second Schedule by granting excise duty exemptions on all goods and services imported or purchased locally by the Defence Forces Welfare Services. This measure recognizes the welfare services as a public interest entity and reduces operational costs.

Miscellaneous Fees and Levies Act

Import Declaration Fee (IDF)

The Act mandates that 20% of IDF collections be placed in a Fund governed by the Public Finance Management Act. From this fund, 10% will support Kenya's contributions to international bodies, and another 10% will fund revenue enforcement. This amendment marks a significant shift from earlier frameworks under the MFLA, which lacked a defined revenue utilization structure. The change thereby should help enhance fiscal accountability and strategic deployment of trade-related revenues

  • Effective date: 1 January 2026

Clarification on refund provisions

The Act amends Section 9B of the MFLA by removing the reference to Section 47 of the Tax Procedures Act, which previously governed the refund process for excess levies like the IDF and the Railway Development Levy. This deletion signals a shift away from standardized refund timelines and procedures, suggesting that future claims may now be subject to separate administrative guidelines or regulations issued by either the KRA or Cabinet Secretary. The change introduces procedural flexibility but may reduce predictability for taxpayers seeking levy refunds.

Railway Development Levy

The Act expands exemptions from Railway Development Levy to include Defence Forces Welfare Services, covering both goods and services — streamlining procurement costs for national security operations and aligning with exemptions in related tax statutes.

Changes in Export and Investment Promotion Levy rates

The Act introduces export and investment promotion levy on the following products:

 

Tariff Heading

Description

Previous rate

New rate

69.07

Ceramic flags and paving, hearth or wall tiles; unglazed ceramic mosaic cubes and the like, whether or not on a backing; finishing ceramics

nil

3%

69.10

Ceramic sinks, wash basins, wash basin pedestals, baths, bidets, water closet pans, flushing cisterns, urinals and similar sanitary fixtures

nil

3%

72.06

Iron and non-alloy steel in ingots or other primary forms (excluding iron of heading 72.03)

nil

17.5%

72.07

Semi-finished products of iron or non-alloy steel

nil

17.5%

72.13

Bars and rods, hot-rolled, in irregularly wound coils, of iron or non-alloy steel

nil

17.5%

72.14

Other bars and rods of iron or non-alloy steel not further worked than forged, hot-rolled, hot-drawn or hot-extruded, but including those twisted after rolling

nil

17.5%

72.24

Other alloy steel in ingots or other primary forms; semi-

finished products of other alloy steel

nil

17.5%

These amendments are likely to increase the cost of these products.

Other Amendments

Stamp Duty Act

Exemption of stamp duty on internal reorganizations

Section 117 of the Stamp Duty Act has been amended to exempt from stamp duty a company's transfer of property to its shareholders, as part of an internal reorganization. The exemption is subject to the following conditions:

  • The property must be transferred in proportion to each shareholder's existing shareholding in the company at the time of the transfer. (This is to ensure fairness and prevent disguised distributions or sales.)
  • If the property being transferred consists of shares, those shares must be in a subsidiary of the transferring company.
* * * * * * * * * *
Contact Information

For additional information concerning this Alert, please contact:

Ernst & Young (Kenya), Nairobi

Ernst & Young LLP (United Kingdom), Pan African Tax Desk, London

Published by NTD’s Tax Technical Knowledge Services group; Carolyn Wright, legal editor

Document ID: 2025-1498